Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007404.1 Kokia drynarioides strain JFW-HI SEQ_122023, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2672
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36


Found at i:470 original size:13 final size:13

Alignment explanation


    Indices: 454--494  Score: 64
    Period size: 13  Copynumber: 3.2  Consensus size: 13

        444 AGTTTCTTTT

                         
        454 TATTTATTATATA
          1 TATTTATTATATA

                        *
        467 TATTTATTATATT
          1 TATTTATTATATA

                     *   
        480 TATTTATTAAATA
          1 TATTTATTATATA

              
        493 TA
          1 TA

        495 CATTGAATAC


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  13   25  1.00

ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61


Consensus pattern (13 bp):   
TATTTATTATATA

Found at i:1029 original size:14 final size:15

Alignment explanation


    Indices: 1002--1034  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        992 TTGGGTTATT

                           
       1002 TTGTAATCTTGGACA
          1 TTGTAATCTTGGACA

                          *
       1017 TTGTAAT-TTGGACT
          1 TTGTAATCTTGGACA

                
       1031 TTGT
          1 TTGT

       1035 GTTGAATATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14   10  0.59
  15    7  0.41

ACGTcount: A:0.21, C:0.09, G:0.21, T:0.48


Consensus pattern (15 bp):   
TTGTAATCTTGGACA
Done.