Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000741.1 Kokia drynarioides strain JFW-HI SEQ_111773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4027
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.34


Found at i:634 original size:29 final size:30

Alignment explanation


    Indices: 577--634  Score: 82
    Period size: 29  Copynumber: 2.0  Consensus size: 30

        567 AACTGAATCA

                                    *     
        577 AATCAAAATTTTATATATAGAATCGCACAT
          1 AATCAAAATTTTATATATAGAATCACACAT

                                *  *     
        607 AATCAAAA-TTTATATATAGCATTACACA
          1 AATCAAAATTTTATATATAGAATCACACA

        635 CGTATAATTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  29   17  0.68
  30    8  0.32

ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33


Consensus pattern (30 bp):   
AATCAAAATTTTATATATAGAATCACACAT
Done.