Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007418.1 Kokia drynarioides strain JFW-HI SEQ_122037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1978
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:991 original size:30 final size:30

Alignment explanation


    Indices: 957--1125  Score: 153
    Period size: 30  Copynumber: 5.6  Consensus size: 30

        947 GTTTTATCTA

                 *               *  *     
        957 AAAATCACATTTTAACCCCTATACATTCCC
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                         *                 
        987 AAAATTACATTTTGACTCCC-AAACTTTCCC
          1 AAAATTACATTTTAAC-CCCTAAACTTTCCC

                            *          *  
       1017 AAAATTACATTTTAACACCTAAACTTTTCC
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                  *      *         *   * *
       1047 AAAATTGCATTTTGACCCCTAAATTTTTCT
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                          * *** *          
       1077 AAAATTACATTTTAGCAATTGAACTTGT-CC
          1 AAAATTACATTTTAACCCCTAAACTT-TCCC

                         *     
       1107 AAAATTACATTTTGACCCC
          1 AAAATTACATTTTAACCCC

       1126 AAATCCTCCA


Statistics
Matches: 110,  Mismatches: 26, Indels: 6
        0.77            0.18        0.04

Matches are distributed among these distances:
  29    2  0.02
  30  104  0.95
  31    4  0.04

ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36


Consensus pattern (30 bp):   
AAAATTACATTTTAACCCCTAAACTTTCCC

Found at i:1050 original size:60 final size:59

Alignment explanation


    Indices: 957--1128  Score: 200
    Period size: 60  Copynumber: 2.9  Consensus size: 59

        947 GTTTTATCTA

                 *          *    *  *  *                                
        957 AAAATCACATTTTAACCCCTATACATTCCCAAAATTACATTTTGACTCCCAAACTTTCCC
          1 AAAATTACATTTTAACACCTAAACTTTTCCAAAATTACATTTTGAC-CCCAAACTTTCCC

                                                *                *   * *
       1017 AAAATTACATTTTAACACCTAAACTTTTCCAAAATTGCATTTTGACCCCTAAATTTTTCT
          1 AAAATTACATTTTAACACCTAAACTTTTCCAAAATTACATTTTGACCCC-AAACTTTCCC

                          *  ** *     *                         
       1077 AAAATTACATTTTAGCAATTGAACTTGTCCAAAATTACATTTTGACCCCAAA
          1 AAAATTACATTTTAACACCTAAACTTTTCCAAAATTACATTTTGACCCCAAA

       1129 TCCTCCAAAA


Statistics
Matches: 96,  Mismatches: 15, Indels: 3
        0.84            0.13        0.03

Matches are distributed among these distances:
  59    6  0.06
  60   90  0.94

ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35


Consensus pattern (59 bp):   
AAAATTACATTTTAACACCTAAACTTTTCCAAAATTACATTTTGACCCCAAACTTTCCC
Done.