Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007419.1 Kokia drynarioides strain JFW-HI SEQ_122038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1978
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:1088 original size:29 final size:30

Alignment explanation


    Indices: 958--1125  Score: 144
    Period size: 30  Copynumber: 5.6  Consensus size: 30

        948 GTTTCATCTA

                 *               *  *     
        958 AAAATCACATTTTAACCCCTATACATTCCC
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                         *                 
        988 AAAATTACATTTTGACTCCC-AAACTTTCCC
          1 AAAATTACATTTTAAC-CCCTAAACTTTCCC

                         *  *          *  
       1018 AAAATTACATTTTGACACCTAAACTTTTCC
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                  **                   * *
       1048 AAAATTGTATTTTAACCCCTAAA-TTTTCT
          1 AAAATTACATTTTAACCCCTAAACTTTCCC

                          * *** *          
       1077 AAAATTACATTTTAGCAATTGAACTTGT-CC
          1 AAAATTACATTTTAACCCCTAAACTT-TCCC

                         *     
       1107 AAAATTACATTTTGACCCC
          1 AAAATTACATTTTAACCCC

       1126 AAATCCTCCA


Statistics
Matches: 110,  Mismatches: 24, Indels: 8
        0.77            0.17        0.06

Matches are distributed among these distances:
  29   23  0.21
  30   83  0.75
  31    4  0.04

ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36


Consensus pattern (30 bp):   
AAAATTACATTTTAACCCCTAAACTTTCCC
Done.