Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007420.1 Kokia drynarioides strain JFW-HI SEQ_122040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6766
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:751 original size:26 final size:26

Alignment explanation


    Indices: 722--783  Score: 72
    Period size: 26  Copynumber: 2.4  Consensus size: 26

        712 ACTTCTGGGC

                                       
        722 ACAATTCTGGACATGC-TCATACAACG
          1 ACAATTCTGGACAT-CATCATACAACG

                *               *  ** 
        748 ACAACTCTGGACATCATCATGCAGTG
          1 ACAATTCTGGACATCATCATACAACG

                      
        774 ACAATTCTGG
          1 ACAATTCTGG

        784 GTGCAATTTT


Statistics
Matches: 30,  Mismatches: 5, Indels: 2
        0.81            0.14        0.05

Matches are distributed among these distances:
  25    1  0.03
  26   29  0.97

ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24


Consensus pattern (26 bp):   
ACAATTCTGGACATCATCATACAACG

Found at i:1028 original size:26 final size:26

Alignment explanation


    Indices: 999--1060  Score: 97
    Period size: 26  Copynumber: 2.4  Consensus size: 26

        989 TCAAGGCCTA

                 *        *           
        999 CTAAACATTCACCGGCTCGAAGCTTG
          1 CTAAATATTCACCGACTCGAAGCTTG

                    *                 
       1025 CTAAATATACACCGACTCGAAGCTTG
          1 CTAAATATTCACCGACTCGAAGCTTG

                      
       1051 CTAAATATTC
          1 CTAAATATTC

       1061 TCTTATTTTC


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  26   32  1.00

ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26


Consensus pattern (26 bp):   
CTAAATATTCACCGACTCGAAGCTTG
Done.