genome.fa.s7423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007423.1 Kokia drynarioides strain JFW-HI SEQ_122043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  239210

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652--1677	13	2.0	13	100	0	52	46	7	7	38	1.61
4804--4862	21	2.8	21	82	7	75	33	1	1	62	1.15
4782--4857	21	3.8	21	75	16	72	38	1	2	57	1.21
4782--4897	39	2.8	43	78	10	109	38	0	3	56	1.22
7193--7229	3	12.3	3	100	0	74	67	0	32	0	0.91
9013--9151	40	3.5	40	80	8	147	25	22	21	30	1.99
9043--9156	40	2.8	40	86	0	156	24	22	21	30	1.99
13379--13428	11	4.5	11	82	0	64	52	24	8	16	1.70
15915--15955	21	2.0	21	90	0	64	60	7	26	4	1.43
15972--16003	3	10.7	3	93	0	55	68	0	28	3	1.04
16702--16740	10	3.9	10	83	9	53	82	0	17	0	0.68
19771--20142	185	2.0	185	97	0	708	34	14	12	38	1.83
23130--23170	21	2.0	21	90	0	64	29	14	29	26	1.95
24179--24240	30	2.0	33	87	9	94	27	4	19	48	1.69
34957--35157	26	7.7	26	75	3	163	27	23	17	30	1.97
35004--35163	78	2.1	78	81	2	187	28	23	16	32	1.96
34980--35144	52	3.2	52	79	0	195	26	23	16	33	1.95
35357--35484	24	5.3	24	83	3	150	21	22	17	38	1.93
38927--39191	24	11.0	24	82	0	287	37	17	24	20	1.93
39340--39410	26	2.7	26	93	0	115	29	19	26	23	1.98
42365--42399	18	1.9	18	88	0	52	40	25	11	22	1.88
46722--46775	24	2.2	25	84	12	69	14	12	1	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48435--48485	12	4.4	12	83	11	54	64	0	35	0	0.94
48451--48486	10	3.8	9	89	10	54	72	0	27	0	0.85
48448--48489	22	2.0	21	90	4	66	71	0	28	0	0.86
48900--48958	17	3.5	17	73	17	50	16	11	18	52	1.74
51342--51438	26	3.7	26	78	0	104	34	17	19	28	1.95
52740--52764	12	2.1	12	100	0	50	60	8	16	16	1.58
56623--56656	13	2.6	13	85	0	50	58	11	0	29	1.33
65759--65825	23	3.0	22	86	4	89	46	20	4	28	1.70
65764--65825	22	2.7	23	85	5	81	48	20	3	27	1.65
69088--69310	9	23.3	9	67	27	72	54	18	2	24	1.57
69168--69257	25	3.4	25	70	19	74	58	21	0	20	1.39
69145--69308	21	7.4	20	67	22	71	54	19	2	23	1.55
69070--69302	119	2.0	117	80	9	269	54	18	3	23	1.57
69169--69308	55	2.6	51	77	15	140	55	20	2	22	1.55
76302--76366	31	2.1	31	88	5	96	64	4	6	24	1.36
76363--76449	27	3.2	27	79	8	104	65	17	6	10	1.44
85561--85684	42	2.9	42	79	3	133	37	17	19	25	1.94
87322--87484	76	2.1	76	97	2	310	53	12	0	33	1.42
89688--89727	21	1.9	21	84	0	53	25	2	15	57	1.50
90272--90299	3	9.3	3	100	0	56	64	0	0	35	0.94
90301--90500	99	2.0	99	97	0	373	16	16	33	34	1.91
90974--91045	38	1.9	37	83	8	92	58	4	1	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91280--91330	21	2.4	21	93	0	93	29	21	5	43	1.76
98332--98374	21	2.0	21	91	8	70	27	9	30	32	1.88
98504--98595	40	2.3	40	83	3	105	40	19	18	21	1.92
101030--101282	86	2.9	87	83	1	321	29	13	27	29	1.94
101030--101257	87	2.6	87	86	0	305	29	13	28	28	1.94
101049--101282	43	5.4	43	83	1	288	29	12	27	30	1.93
104305--104332	14	2.0	14	100	0	56	42	28	0	28	1.56
113063--113161	51	1.9	51	93	0	171	35	15	21	28	1.93
113130--113188	30	2.0	30	96	0	109	37	15	22	25	1.93
123466--123523	22	2.6	22	80	2	62	48	3	1	46	1.29
123867--123918	18	3.0	18	81	10	56	51	0	1	46	1.12
124337--124361	13	1.9	13	100	0	50	56	12	0	32	1.36
126181--126223	21	2.1	21	95	4	79	18	0	53	27	1.45
135414--135467	29	2.0	28	89	10	85	50	0	1	48	1.11
135720--135799	30	2.7	30	80	7	83	41	0	3	55	1.18
137693--137769	29	2.6	29	72	11	68	58	3	5	32	1.38
139784--139848	30	2.2	30	88	0	94	60	13	4	21	1.52
145263--145361	10	10.1	10	70	11	53	60	4	3	32	1.30
153354--153394	21	2.0	21	90	0	64	41	26	12	19	1.87
156944--156985	23	1.9	21	90	9	66	7	4	19	69	1.31
161910--161941	16	2.0	16	100	0	64	37	18	6	37	1.76
172910--172962	24	2.2	25	77	16	58	58	0	9	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181148--181209	23	2.8	23	88	7	85	46	4	3	45	1.40
181169--181267	11	8.8	11	67	20	53	52	2	2	43	1.24
183522--183546	1	25.0	1	100	0	50	0	0	0	100	0.00
185078--185138	31	2.0	31	96	0	113	40	11	14	32	1.82
188591--188887	165	1.8	165	82	1	389	29	15	18	36	1.92
196041--196100	23	2.6	23	79	12	61	41	3	1	53	1.27
196405--196463	31	1.9	31	85	0	82	16	18	13	50	1.77
196604--196653	25	2.0	25	85	11	68	54	4	4	38	1.38
196583--196651	29	2.4	30	83	9	90	57	2	2	36	1.28
202328--202366	20	1.9	21	89	5	62	35	0	20	43	1.52
203380--203439	26	2.4	24	86	8	75	60	3	6	30	1.39
207210--207244	13	2.8	13	86	4	54	0	20	0	80	0.72
209909--209951	3	14.3	3	100	0	86	0	32	0	67	0.91
209951--210108	46	3.3	46	66	11	118	28	22	8	40	1.84
210635--210806	88	1.9	89	88	3	258	37	9	22	30	1.86
218530--218561	9	3.6	9	100	0	64	81	0	9	9	0.88
218658--218755	48	2.0	48	98	0	187	24	16	16	42	1.87
218928--219073	29	4.9	29	80	3	130	38	23	4	34	1.74
223771--223858	30	2.9	30	74	0	86	37	26	3	32	1.73
224015--224063	15	3.3	15	77	8	55	20	0	6	73	1.04
229185--229263	25	3.1	26	81	9	90	37	8	11	41	1.72
229188--229263	24	3.0	25	80	5	73	36	9	11	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229837--229875	20	2.0	20	85	10	53	33	2	5	58	1.33
230757--230823	26	2.6	26	80	4	73	20	7	10	61	1.53
234853--234903	21	2.4	21	80	6	59	29	27	15	27	1.96
235777--236065	102	2.8	103	87	4	422	35	23	14	25	1.93
235777--236065	52	5.6	52	87	3	397	35	23	14	25	1.93
235777--236065	154	1.9	153	85	4	393	35	23	14	25	1.93
236645--236844	100	2.0	100	97	0	373	47	14	7	31	1.71
239177--239209	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!