Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000743.1 Kokia drynarioides strain JFW-HI SEQ_111779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1420
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36


Found at i:302 original size:16 final size:16

Alignment explanation


    Indices: 257--306  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        247 TAAACCTAGC

                      *     
        257 TAATTAATTACCAAAA
          1 TAATTAATTATCAAAA

                        *    
        273 T-A-TAA-TATAAAAAA
          1 TAATTAATTAT-CAAAA

                            
        287 TAATTAATTATCAAAA
          1 TAATTAATTATCAAAA

                
        303 TAAT
          1 TAAT

        307 ATCCCCATTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 8
        0.71            0.08        0.21

Matches are distributed among these distances:
  13    2  0.07
  14    8  0.30
  15    2  0.07
  16   12  0.44
  17    3  0.11

ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34


Consensus pattern (16 bp):   
TAATTAATTATCAAAA
Done.