Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007439.1 Kokia drynarioides strain JFW-HI SEQ_122060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3716
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1440 original size:38 final size:39

Alignment explanation


    Indices: 1363--1450  Score: 126
    Period size: 38  Copynumber: 2.3  Consensus size: 39

       1353 AAAAATTATA

                   *                       *       
       1363 TTTAATACAATAAAATATTTATTATATTTATTTATG-TT
          1 TTTAATATAATAAAATATTTATTATATTTATATATGTTT

                                                     
       1401 TTTAATATAATAAAATATTTATTATATTTATGATA-GTTTT
          1 TTTAATATAATAAAATATTTATTATATTTAT-ATATG-TTT

                      
       1441 TTTAATATAA
          1 TTTAATATAA

       1451 ATTGTTTTTA


Statistics
Matches: 45,  Mismatches: 2, Indels: 4
        0.88            0.04        0.08

Matches are distributed among these distances:
  38   31  0.69
  39    2  0.04
  40   12  0.27

ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55


Consensus pattern (39 bp):   
TTTAATATAATAAAATATTTATTATATTTATATATGTTT
Done.