Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007441.1 Kokia drynarioides strain JFW-HI SEQ_122062, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4261
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34


Found at i:3623 original size:14 final size:15

Alignment explanation


    Indices: 3604--3636  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       3594 GAAAATAGAT

                           
       3604 ATTTAATTAATT-AA
          1 ATTTAATTAATTGAA

                    *      
       3618 ATTTAATTCATTGAA
          1 ATTTAATTAATTGAA

                
       3633 ATTT
          1 ATTT

       3637 TTAAACCCTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14   11  0.65
  15    6  0.35

ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52


Consensus pattern (15 bp):   
ATTTAATTAATTGAA
Done.