Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007443.1 Kokia drynarioides strain JFW-HI SEQ_122064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9217
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:5227 original size:23 final size:23

Alignment explanation


    Indices: 5198--5258  Score: 61
    Period size: 23  Copynumber: 2.7  Consensus size: 23

       5188 CCGACTGTTA

                                   
       5198 ACTTTGATCGACCCGACCCGTTG
          1 ACTTTGATCGACCCGACCCGTTG

                          **        
       5221 ACTTTGA-CTGACCTAACCCGTTG
          1 ACTTTGATC-GACCCGACCCGTTG

             *   *  *      
       5244 AGTTTAATTGACCCG
          1 ACTTTGATCGACCCG

       5259 TTGACCGTCG


Statistics
Matches: 29,  Mismatches: 7, Indels: 4
        0.73            0.17        0.10

Matches are distributed among these distances:
  22    1  0.03
  23   28  0.97

ACGTcount: A:0.21, C:0.30, G:0.20, T:0.30


Consensus pattern (23 bp):   
ACTTTGATCGACCCGACCCGTTG
Done.