Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007444.1 Kokia drynarioides strain JFW-HI SEQ_122065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10382
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30


Found at i:1612 original size:23 final size:23

Alignment explanation


    Indices: 1561--1621  Score: 61
    Period size: 23  Copynumber: 2.7  Consensus size: 23

       1551 CGACGGTCAA

                   * *   *         
       1561 CGGGTCAATTAAACTCAACGGGT
          1 CGGGTCAGTCAAAGTCAACGGGT

            **                     
       1584 TAGGTCAGTCAAAGTCAACGGGT
          1 CGGGTCAGTCAAAGTCAACGGGT

                            
       1607 CGGGTC-GATCAAAGT
          1 CGGGTCAG-TCAAAGT

       1622 TAACAGTCGG


Statistics
Matches: 30,  Mismatches: 7, Indels: 2
        0.77            0.18        0.05

Matches are distributed among these distances:
  22    1  0.03
  23   29  0.97

ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21


Consensus pattern (23 bp):   
CGGGTCAGTCAAAGTCAACGGGT
Done.