Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007445.1 Kokia drynarioides strain JFW-HI SEQ_122066, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9702
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38


Found at i:391 original size:17 final size:18

Alignment explanation


    Indices: 362--405  Score: 63
    Period size: 17  Copynumber: 2.5  Consensus size: 18

        352 TCAGCAAATG

                    *        *
        362 AATTTAAACTTAAAAAAT
          1 AATTTAAAATTAAAAAAA

                              
        380 AA-TTAAAATTAAAAAAA
          1 AATTTAAAATTAAAAAAA

                     
        397 AATTTAAAA
          1 AATTTAAAA

        406 AAATTTGGGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  17   15  0.65
  18    8  0.35

ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30


Consensus pattern (18 bp):   
AATTTAAAATTAAAAAAA

Found at i:9056 original size:25 final size:26

Alignment explanation


    Indices: 9028--9078  Score: 61
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       9018 TTTGAATGAC

                                       
       9028 TTAAATG-T-AAAAAAAGAAAAAATAA
          1 TTAAATGATCAAAAAAA-AAAAAATAA

                *         *           
       9053 TTAAGTGATCAAAATAAAAAAAATAA
          1 TTAAATGATCAAAAAAAAAAAAATAA

       9079 ATAATAAGTC


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  25    6  0.27
  26   10  0.45
  27    6  0.27

ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22


Consensus pattern (26 bp):   
TTAAATGATCAAAAAAAAAAAAATAA
Done.