Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007449.1 Kokia drynarioides strain JFW-HI SEQ_122070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1950
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34


Found at i:1841 original size:20 final size:21

Alignment explanation


    Indices: 1805--1854  Score: 52
    Period size: 20  Copynumber: 2.4  Consensus size: 21

       1795 ATTGGCATGG

                             *    
       1805 TTTATATTAAGTGTAAATA-GA
          1 TTTA-ATTAAGTGTAAAAATGA

                                  
       1826 TTTAATTAAGAT-TAAAAATGA
          1 TTTAATTAAG-TGTAAAAATGA

                     
       1847 -TTAATTAA
          1 TTTAATTAA

       1855 AGCCTAATGA


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  20   19  0.73
  21    7  0.27

ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42


Consensus pattern (21 bp):   
TTTAATTAAGTGTAAAAATGA
Done.