Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007450.1 Kokia drynarioides strain JFW-HI SEQ_122071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3508
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34


Found at i:1842 original size:20 final size:21

Alignment explanation


    Indices: 1806--1855  Score: 52
    Period size: 20  Copynumber: 2.4  Consensus size: 21

       1796 ATTGGCATGG

                             *    
       1806 TTTATATTAAGTGTAAATA-GA
          1 TTTA-ATTAAGTGTAAAAATGA

                                  
       1827 TTTAATTAAGAT-TAAAAATGA
          1 TTTAATTAAG-TGTAAAAATGA

                     
       1848 -TTAATTAA
          1 TTTAATTAA

       1856 AGCCTAATGA


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  20   19  0.73
  21    7  0.27

ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42


Consensus pattern (21 bp):   
TTTAATTAAGTGTAAAAATGA

Found at i:2673 original size:20 final size:19

Alignment explanation


    Indices: 2640--2678  Score: 51
    Period size: 20  Copynumber: 2.0  Consensus size: 19

       2630 TCTAATGAAT

                    **          
       2640 ATTGGAAATGTGAAACGACA
          1 ATTGGAAACATGAAA-GACA

                               
       2660 ATTGGAAACATGAAAGACA
          1 ATTGGAAACATGAAAGACA

       2679 GTAGCTATGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.49, C:0.10, G:0.23, T:0.18


Consensus pattern (19 bp):   
ATTGGAAACATGAAAGACA
Done.