Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01007451.1 Kokia drynarioides strain JFW-HI SEQ_122072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4519
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Found at i:1111 original size:150 final size:150
Alignment explanation
Indices: 840--1141 Score: 586
Period size: 150 Copynumber: 2.0 Consensus size: 150
830 TAAACATTCG
*
840 TGGAGTTTTTCCCGACAAATTGCTTAGTACACAATTCTAGATTCTTTTTCATTCTCCTCTTCACT
1 TGGAGTTTTTCCCGACAAATTGCTTAATACACAATTCTAGATTCTTTTTCATTCTCCTCTTCACT
905 TGTATGTTTTCACATATTTTTTTATTAATGAATAAAGAAACCATGAGGAACTAATTCTATTTTTG
66 TGTATGTTTTCACATATTTTTTTATTAATGAATAAAGAAACCATGAGGAACTAATTCTATTTTTG
970 GGAATTAAGGAGTGGACATA
131 GGAATTAAGGAGTGGACATA
*
990 TGGAGTTTTTCCCGACAAATTGCTTAATACACAATTCTAGTTTCTTTTTCATTCTCCTCTTCACT
1 TGGAGTTTTTCCCGACAAATTGCTTAATACACAATTCTAGATTCTTTTTCATTCTCCTCTTCACT
1055 TGTATGTTTTCACATATTTTTTTATTAATGAATAAAGAAACCATGAGGAACTAATTCTATTTTTG
66 TGTATGTTTTCACATATTTTTTTATTAATGAATAAAGAAACCATGAGGAACTAATTCTATTTTTG
1120 GGAATTAAGGAGTGGACATA
131 GGAATTAAGGAGTGGACATA
1140 TG
1 TG
1142 AATAATTAAT
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (150 bp):
TGGAGTTTTTCCCGACAAATTGCTTAATACACAATTCTAGATTCTTTTTCATTCTCCTCTTCACT
TGTATGTTTTCACATATTTTTTTATTAATGAATAAAGAAACCATGAGGAACTAATTCTATTTTTG
GGAATTAAGGAGTGGACATA
Done.