Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007452.1 Kokia drynarioides strain JFW-HI SEQ_122073, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3966
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34


Found at i:3140 original size:24 final size:24

Alignment explanation


    Indices: 3113--3158  Score: 67
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       3103 ATATCCAAAA

                                     
       3113 AGTAACAACAA-AATAATAATAATT
          1 AGTAACAA-AATAATAATAATAATT

                *                 
       3137 AGTAGCAAAATAATAATAATAA
          1 AGTAACAAAATAATAATAATAA

       3159 AATTTTAGAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    2  0.10
  24   18  0.90

ACGTcount: A:0.63, C:0.07, G:0.07, T:0.24


Consensus pattern (24 bp):   
AGTAACAAAATAATAATAATAATT
Done.