Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007453.1 Kokia drynarioides strain JFW-HI SEQ_122074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5010
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:1835 original size:25 final size:25

Alignment explanation


    Indices: 1801--1853  Score: 106
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1791 CAAGAAAAGA

                                     
       1801 TTGATCTTCTAGACTTGATGATGCT
          1 TTGATCTTCTAGACTTGATGATGCT

                                     
       1826 TTGATCTTCTAGACTTGATGATGCT
          1 TTGATCTTCTAGACTTGATGATGCT

               
       1851 TTG
          1 TTG

       1854 TGGACATTGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45


Consensus pattern (25 bp):   
TTGATCTTCTAGACTTGATGATGCT
Done.