Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007462.1 Kokia drynarioides strain JFW-HI SEQ_122083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14200
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:13455 original size:22 final size:23

Alignment explanation


    Indices: 13429--13473  Score: 58
    Period size: 22  Copynumber: 2.0  Consensus size: 23

      13419 ATAATCTTAA

                           *        
      13429 ATTTTAGA-CTATTTTAT-TTTTT
          1 ATTTTA-ATCTATTTAATATTTTT

                                   
      13451 ATTTTAATCTATTTAATATTTTT
          1 ATTTTAATCTATTTAATATTTTT

      13474 CAAATAAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  21    1  0.05
  22   14  0.70
  23    5  0.25

ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67


Consensus pattern (23 bp):   
ATTTTAATCTATTTAATATTTTT
Done.