Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007464.1 Kokia drynarioides strain JFW-HI SEQ_122085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5877
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:3044 original size:15 final size:17

Alignment explanation


    Indices: 3014--3048  Score: 56
    Period size: 15  Copynumber: 2.2  Consensus size: 17

       3004 TTTTAAAAAT

                             
       3014 ATATTATATATAATTTA
          1 ATATTATATATAATTTA

                             
       3031 ATATT-TAT-TAATTTA
          1 ATATTATATATAATTTA

               
       3046 ATA
          1 ATA

       3049 AAATTTAAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15   10  0.56
  16    3  0.17
  17    5  0.28

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (17 bp):   
ATATTATATATAATTTA
Done.