Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007465.1 Kokia drynarioides strain JFW-HI SEQ_122086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4657
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Found at i:2425 original size:24 final size:25

Alignment explanation


    Indices: 2398--2446  Score: 66
    Period size: 24  Copynumber: 2.0  Consensus size: 25

       2388 ATTTTGAAAA

                                      
       2398 AAATATATACAT-GTTTTTT-TTTTT
          1 AAATATATA-ATAGTTTTTTATTTTT

                *                    
       2422 AAATTTATAATAGTTTTTTATTTTT
          1 AAATATATAATAGTTTTTTATTTTT

       2447 CCTATTTAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  23    2  0.09
  24   15  0.68
  25    5  0.23

ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63


Consensus pattern (25 bp):   
AAATATATAATAGTTTTTTATTTTT
Done.