Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01007466.1 Kokia drynarioides strain JFW-HI SEQ_122087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21808
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Warning! 87 characters in sequence are not A, C, G, or T
Found at i:8123 original size:31 final size:31
Alignment explanation
Indices: 8085--8154 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
8075 TTTGGTTTGG
8085 GTATCAAATTGAACATTAAAATCAAATTCAA
1 GTATCAAATTGAACATTAAAATCAAATTCAA
* * *
8116 GTATCAAATTGAACATTGAAGTCAAATTCAG
1 GTATCAAATTGAACATTAAAATCAAATTCAA
8147 GTATCAAA
1 GTATCAAA
8155 CTATATTAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (31 bp):
GTATCAAATTGAACATTAAAATCAAATTCAA
Found at i:9330 original size:19 final size:21
Alignment explanation
Indices: 9306--9350 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 21
9296 TCTGATGAGG
9306 AGAAAAGAA-ATTTT-AA-GAA
1 AGAAAA-AACATTTTCAACGAA
9325 AGAAAAAACATTTTCAACGAA
1 AGAAAAAACATTTTCAACGAA
9346 AGAAA
1 AGAAA
9351 TGCACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.09
19 11 0.48
20 2 0.09
21 8 0.35
ACGTcount: A:0.62, C:0.07, G:0.13, T:0.18
Consensus pattern (21 bp):
AGAAAAAACATTTTCAACGAA
Found at i:10561 original size:17 final size:17
Alignment explanation
Indices: 10539--10585 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
10529 CCAATTTTAG
*
10539 ATTTTAAATTTTAATTC
1 ATTTTAAATTTAAATTC
* *
10556 ATTTTAAGTTTAAATTT
1 ATTTTAAATTTAAATTC
*
10573 ATTGTAAATTTAA
1 ATTTTAAATTTAA
10586 GCTTATTTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (17 bp):
ATTTTAAATTTAAATTC
Found at i:11384 original size:3 final size:3
Alignment explanation
Indices: 11378--11461 Score: 71
Period size: 3 Copynumber: 27.7 Consensus size: 3
11368 ATAATAGCAT
* * *
11378 TAA TAA TAA TAG TAA TAT TAA TAA TAA TAA TAA GT-A TAA TAC TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
* * * * *
11423 TGA CAT TAA TTAA TAA TAA TAA TAT TAA TAA TAG TAA TA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
11462 TTAAATAAAT
Statistics
Matches: 62, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
2 1 0.02
3 57 0.92
4 4 0.06
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:11384 original size:15 final size:15
Alignment explanation
Indices: 11361--11403 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
11351 TTTTTTCAAA
11361 ATTATTAATAATAGC
1 ATTATTAATAATAGC
* *
11376 ATTAATAATAATAGT
1 ATTATTAATAATAGC
*
11391 AATATTAATAATA
1 ATTATTAATAATA
11404 ATAATAAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (15 bp):
ATTATTAATAATAGC
Found at i:11408 original size:15 final size:15
Alignment explanation
Indices: 11381--11465 Score: 80
Period size: 15 Copynumber: 5.2 Consensus size: 15
11371 ATAGCATTAA
*
11381 TAATAATAGTAATAT
1 TAATAATAATAATAT
11396 TAATAATAATAATAAGT
1 TAATAATAATAAT-A-T
*
11413 ATAATACTAATGACATTAAT
1 -TAATAATAAT-A-A-T-AT
11433 TAATAATAATAATAT
1 TAATAATAATAATAT
*
11448 TAATAATAGTAATAT
1 TAATAATAATAATAT
11463 TAA
1 TAA
11466 ATAAATAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
15 31 0.52
16 2 0.03
17 2 0.03
18 10 0.17
19 10 0.17
20 2 0.03
21 3 0.05
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (15 bp):
TAATAATAATAATAT
Found at i:12137 original size:36 final size:37
Alignment explanation
Indices: 12095--12168 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
12085 ATTTTGACTT
12095 AAATACATGTATGGGAACAATGCCGTTTTGA-GGCTG
1 AAATACATGTATGGGAACAATGCCGTTTTGAGGGCTG
12131 AAATACATGTATGGGAACAATGCCGTTTTGAGGGCTG
1 AAATACATGTATGGGAACAATGCCGTTTTGAGGGCTG
12168 A
1 A
12169 GTTTCAGCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (37 bp):
AAATACATGTATGGGAACAATGCCGTTTTGAGGGCTG
Found at i:12650 original size:29 final size:29
Alignment explanation
Indices: 12616--12774 Score: 121
Period size: 29 Copynumber: 5.5 Consensus size: 29
12606 TAAACTGTCT
12616 AAAAATTACATTGTTACCCTCGAATTTTCC
1 AAAAATTACATT-TTACCCTCGAATTTTCC
* *
12646 -AAAATTCCATTTTGA-CCTTG-ATATTTCC
1 AAAAATTACATTTT-ACCCTCGAAT-TTTCC
* **
12674 AAAAATTACATTATTACCC-CTAAACTTCC
1 AAAAATTACATT-TTACCCTCGAATTTTCC
* * * *
12703 AAAAATTCCATTTTAACCTCGATTTTTTC
1 AAAAATTACATTTTACCCTCGAATTTTCC
* **
12732 AAAAATTAACATTTTACCC-CAAAACTTCC
1 AAAAATT-ACATTTTACCCTCGAATTTTCC
*
12761 AAAAATTTCATTTT
1 AAAAATTACATTTT
12775 TGACCCCGAT
Statistics
Matches: 99, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
27 2 0.02
28 22 0.22
29 61 0.62
30 14 0.14
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAAATTACATTTTACCCTCGAATTTTCC
Found at i:12788 original size:58 final size:57
Alignment explanation
Indices: 12616--12788 Score: 197
Period size: 58 Copynumber: 3.0 Consensus size: 57
12606 TAAACTGTCT
* * ** * *
12616 AAAAATTACATTGTTACCCTCGAATTTTCC-AAAATTCCATTTTGACCTTGATATTTCC
1 AAAAATTACATTATTACCC-CAAAACTTCCAAAAATTCCATTTTGACCTCGAT-TTTTC
* *
12674 AAAAATTACATTATTACCCCTAAACTTCCAAAAATTCCATTTTAACCTCGATTTTTTC
1 AAAAATTACATTATTACCCCAAAACTTCCAAAAATTCCATTTTGACCTCGA-TTTTTC
* *
12732 AAAAATTAACATT-TTACCCCAAAACTTCCAAAAATTTCATTTTTGACCCCGATTTTT
1 AAAAATT-ACATTATTACCCCAAAACTTCCAAAAATTCCA-TTTTGACCTCGATTTTT
12789 TTTTTTTTTC
Statistics
Matches: 100, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
57 7 0.07
58 77 0.77
59 16 0.16
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.38
Consensus pattern (57 bp):
AAAAATTACATTATTACCCCAAAACTTCCAAAAATTCCATTTTGACCTCGATTTTTC
Found at i:12889 original size:28 final size:27
Alignment explanation
Indices: 12856--12928 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
12846 CCCAAACTTT
* *
12856 TCCAAAATTATCATTTTGCCCTCGAATA
1 TCCAAAATT-TCATTTTACCCCCGAATA
**
12884 TCCAAAATTTCCATTTTACCCCCGGGTA
1 TCCAAAATTT-CATTTTACCCCCGAATA
*
12912 TCCAAAAATCTCATTTT
1 TCC-AAAATTTCATTTT
12929 CAACTCCGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 31 0.82
29 6 0.16
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (27 bp):
TCCAAAATTTCATTTTACCCCCGAATA
Found at i:13267 original size:96 final size:97
Alignment explanation
Indices: 13132--13324 Score: 273
Period size: 96 Copynumber: 2.0 Consensus size: 97
13122 GAAAACTTTA
* * *
13132 AAATCGAGGCAATATTCTTTTATTTTGAGTTTTGAAAATTTGTGCCTTAACTTACTAGGTGC-AA
1 AAATCGAGGCAATATTCCTTTATTCTGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGTGCGAA
* *
13196 TTTTTTTCAAGTCGAAACAATCGAATACCCTT
66 TTTTCTTCAAATCGAAACAATCGAATACCCTT
*
13228 AAATCGAGGCAATGTTCCTTTATCTCTGA-TTCTGAAAATTTGTGCCTTAACTTACTAGGTGCGA
1 AAATCGAGGCAATATTCCTTTAT-TCTGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGTGCGA
* * * *
13292 CTTTTCTTCAAATCGAGATAATCGAATATCCTT
65 ATTTTCTTCAAATCGAAACAATCGAATACCCTT
13325 TTCCAAAGTT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
96 53 0.62
97 32 0.38
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATTCTGAGTTCTGAAAATTTGTGCCTTAACTTACTAGGTGCGAA
TTTTCTTCAAATCGAAACAATCGAATACCCTT
Found at i:14224 original size:4 final size:4
Alignment explanation
Indices: 14211--14253 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
14201 AAAATTGAAG
*
14211 GAAA -AAA GAAA GAAA AAAGA GAAA GAAA GAAA GAAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAA
14254 GGAAGAAGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 29 0.83
5 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:14665 original size:20 final size:21
Alignment explanation
Indices: 14624--14666 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14614 TAATTTTCTT
14624 TAATTTAATTTTGCTAGTTAG
1 TAATTTAATTTTGCTAGTTAG
* *
14645 TAATTTTATTTTG-TTGTTAG
1 TAATTTAATTTTGCTAGTTAG
14665 TA
1 TA
14667 GTAGCAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (21 bp):
TAATTTAATTTTGCTAGTTAG
Found at i:15113 original size:14 final size:15
Alignment explanation
Indices: 15094--15137 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
15084 AACCTAGCTA
15094 ATTAATTATCAAAAT
1 ATTAATTATCAAAAT
* *
15109 A-TAA-TATAAAAAA
1 ATTAATTATCAAAAT
15122 ATTAATTATCAAAAT
1 ATTAATTATCAAAAT
15137 A
1 A
15138 ATATCTCCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (15 bp):
ATTAATTATCAAAAT
Found at i:15135 original size:13 final size:13
Alignment explanation
Indices: 15093--15136 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
15083 AAACCTAGCT
15093 AATTAATTATCAA
1 AATTAATTATCAA
**
15106 AATATAATATAAAAA
1 AAT-TAAT-TATCAA
15121 AATTAATTATCAA
1 AATTAATTATCAA
15134 AAT
1 AAT
15137 AATATCTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 10 0.40
14 8 0.32
15 7 0.28
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTAATTATCAA
Found at i:15206 original size:30 final size:30
Alignment explanation
Indices: 15172--15266 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
15162 AAATGGTACA
*
15172 AAATAAATATTTAGTTTATACCATTTTAGT
1 AAATAAATATATAGTTTATACCATTTTAGT
* ** * *
15202 AAAT-AATGATGT-GTGGATACTATTTTGGT
1 AAATAAAT-ATATAGTTTATACCATTTTAGT
* * *
15231 ATATAAATATATATTTTGTACCATTTTAGT
1 AAATAAATATATAGTTTATACCATTTTAGT
15261 AAATAA
1 AAATAA
15267 CACATTTGGG
Statistics
Matches: 48, Mismatches: 14, Indels: 6
0.71 0.21 0.09
Matches are distributed among these distances:
29 22 0.46
30 26 0.54
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (30 bp):
AAATAAATATATAGTTTATACCATTTTAGT
Found at i:15540 original size:43 final size:43
Alignment explanation
Indices: 15458--15542 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
15448 ATTAACATGT
* * *
15458 TAAATTATATTACTTGACTCGTGTTATTATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
* *
15501 TAAATTATATTACTTTACTCTTATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA
15543 TTAATTGTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
Found at i:16174 original size:45 final size:45
Alignment explanation
Indices: 16110--16246 Score: 175
Period size: 45 Copynumber: 3.0 Consensus size: 45
16100 GCATAGCTCA
*
16110 TCAAGCCATGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
* * * *
16155 TCAAGTCAAGGATATCAGCCTCAATTTGACGAGCTACAGCAATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
** * * * *
16200 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCACCACGATAC
1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
16245 TC
1 TC
16247 TATTCCTCTC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (45 bp):
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Found at i:16283 original size:21 final size:21
Alignment explanation
Indices: 16241--16279 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16231 AGCCACCACG
*
16241 ATACTCTATTCCTCTCGGGCA
1 ATACTCTACTCCTCTCGGGCA
16262 ATACTCTACTCCTC-CGGG
1 ATACTCTACTCCTCTCGGG
16280 GCAAATGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.36, G:0.15, T:0.31
Consensus pattern (21 bp):
ATACTCTACTCCTCTCGGGCA
Found at i:19789 original size:89 final size:88
Alignment explanation
Indices: 19696--19887 Score: 217
Period size: 89 Copynumber: 2.2 Consensus size: 88
19686 ATCCGGGGGT
*
19696 AAAATGATAATTTTTAGAAAAATTG-GGATAAAAAATGAAATTTTGGGACA-TCCGGGGTAAAAG
1 AAAATG-TAATTTTTAGAAAAATTGAGG-TAAAAAATGAAATTTTGGGA-AGTCCGGGGTAAAAA
* *
19759 GGTAATTTTTGAAAGTTTCGAGGTTA
63 GGTAAATTTTGAAAGTTTCGAGGTCA
**** * * * *
19785 AAAATGTAATTTTTAGATGTTTTGAGGTTAAAAATGAAATTTTTGGAAGTTCGGGGGTAAAAATG
1 AAAATGTAATTTTTAGAAAAATTGAGGTAAAAAATGAAATTTTGGGAAG-TCCGGGGTAAAAAGG
*
19850 TAAATTTTGTAAGTTTCGAGGTCA
65 TAAATTTTGAAAGTTTCGAGGTCA
*
19874 AAAATGGAATTTTT
1 AAAATGTAATTTTT
19888 GGAAGTTCAG
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
87 1 0.01
88 32 0.37
89 54 0.62
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.35
Consensus pattern (88 bp):
AAAATGTAATTTTTAGAAAAATTGAGGTAAAAAATGAAATTTTGGGAAGTCCGGGGTAAAAAGGT
AAATTTTGAAAGTTTCGAGGTCA
Found at i:19797 original size:29 final size:30
Alignment explanation
Indices: 19760--19925 Score: 169
Period size: 30 Copynumber: 5.6 Consensus size: 30
19750 GGGTAAAAGG
19760 GTAATTTTTGAAAGTTTCGAGGTTAAAAAT
1 GTAATTTTTGAAAGTTTCGAGGTTAAAAAT
* *
19790 GTAATTTTT-AGATGTTTTGAGGTTAAAAAT
1 GTAATTTTTGA-AAGTTTCGAGGTTAAAAAT
* * * *
19820 GAAATTTTTGGAAG-TTCGGGGGTAAAAAT
1 GTAATTTTTGAAAGTTTCGAGGTTAAAAAT
* * *
19849 GTAAATTTTGTAAGTTTCGAGGTCAAAAAT
1 GTAATTTTTGAAAGTTTCGAGGTTAAAAAT
* * *
19879 GGAATTTTTGGAAG-TTC-AGAGATAAAAAT
1 GTAATTTTTGAAAGTTTCGAG-GTTAAAAAT
19908 GTAATTTTTGAATAGTTT
1 GTAATTTTTGAA-AGTTT
19926 AGGGACCTTC
Statistics
Matches: 109, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
28 2 0.02
29 44 0.40
30 61 0.56
31 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (30 bp):
GTAATTTTTGAAAGTTTCGAGGTTAAAAAT
Found at i:19877 original size:59 final size:61
Alignment explanation
Indices: 19762--19917 Score: 185
Period size: 59 Copynumber: 2.6 Consensus size: 61
19752 GTAAAAGGGT
* * * * *
19762 AATTTTTGAAAGTTTCGAGGTTAAAAATGT-AATTTT-TAGATGTTTTGAGGTTAAAAATGA
1 AATTTTTGGAAG-TTCGGGGATAAAAATGTAAATTTTGTAGATGTTTCGAGGTCAAAAATGA
* *
19822 AATTTTTGGAAGTTCGGGGGTAAAAATGTAAATTTTGTA-A-GTTTCGAGGTCAAAAATGG
1 AATTTTTGGAAGTTCGGGGATAAAAATGTAAATTTTGTAGATGTTTCGAGGTCAAAAATGA
* * *
19881 AATTTTTGGAAGTTCAGAGATAAAAATGTAATTTTTG
1 AATTTTTGGAAGTTCGGGGATAAAAATGTAAATTTTG
19918 AATAGTTTAG
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
59 64 0.76
60 18 0.21
61 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (61 bp):
AATTTTTGGAAGTTCGGGGATAAAAATGTAAATTTTGTAGATGTTTCGAGGTCAAAAATGA
Found at i:20664 original size:21 final size:21
Alignment explanation
Indices: 20634--20675 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
20624 ATGCACGTGT
20634 CTCCTACTCCACGCGCCGTCG
1 CTCCTACTCCACGCGCCGTCG
* *
20655 CTCCTTCTCCACGCGCTGTCG
1 CTCCTACTCCACGCGCCGTCG
20676 TTCAGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.50, G:0.19, T:0.24
Consensus pattern (21 bp):
CTCCTACTCCACGCGCCGTCG
Done.