Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007468.1 Kokia drynarioides strain JFW-HI SEQ_122090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2194
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30


Found at i:1153 original size:29 final size:29

Alignment explanation


    Indices: 1093--1162  Score: 70
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1083 AACGATAACG

                                  *    * 
       1093 TAAGTGACTAAAACATAATATTTAAAACA
          1 TAAGTGACTAAAACATAATATTGAAAAAA

                         **               
       1122 TAAGTGACTAAAATGTAATA-TGAGAAAAA
          1 TAAGTGACTAAAACATAATATTGA-AAAAA

                        
       1151 TAAAAGTGACTA
          1 T--AAGTGACTA

       1163 TTTTTATAGT


Statistics
Matches: 34,  Mismatches: 4, Indels: 4
        0.81            0.10        0.10

Matches are distributed among these distances:
  28    2  0.06
  29   23  0.68
  31    9  0.26

ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26


Consensus pattern (29 bp):   
TAAGTGACTAAAACATAATATTGAAAAAA
Done.