Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007473.1 Kokia drynarioides strain JFW-HI SEQ_122095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2209
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:1424 original size:26 final size:26

Alignment explanation


    Indices: 1388--1444  Score: 114
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1378 CAAAGAGGAA

                                      
       1388 CGTCATATCGTCAAAGAGGGAATAAT
          1 CGTCATATCGTCAAAGAGGGAATAAT

                                      
       1414 CGTCATATCGTCAAAGAGGGAATAAT
          1 CGTCATATCGTCAAAGAGGGAATAAT

                 
       1440 CGTCA
          1 CGTCA

       1445 ACCAAGTTAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   31  1.00

ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23


Consensus pattern (26 bp):   
CGTCATATCGTCAAAGAGGGAATAAT
Done.