Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007474.1 Kokia drynarioides strain JFW-HI SEQ_122096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41


Found at i:614 original size:24 final size:23

Alignment explanation


    Indices: 568--635  Score: 64
    Period size: 24  Copynumber: 2.8  Consensus size: 23

        558 CTAATAATAT

                      * *           
        568 TATAAAAATTGAGGTATCAAATTA
          1 TATAAAAATTAAAGTAT-AAATTA

                                    
        592 TATAAAAATTAAAGTATAGAATTA
          1 TATAAAAATTAAAGTATA-AATTA

            *    *     *        
        616 AATCACAAATTTAAGTATAA
          1 TAT-AAAAATTAAAGTATAA

        636 TATAAAACAA


Statistics
Matches: 37,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  23    1  0.03
  24   23  0.62
  25   13  0.35

ACGTcount: A:0.54, C:0.04, G:0.09, T:0.32


Consensus pattern (23 bp):   
TATAAAAATTAAAGTATAAATTA
Done.