genome.fa.s7475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007475.1 Kokia drynarioides strain JFW-HI SEQ_122097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120306

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3972--4341	50	7.5	49	76	3	296	40	20	25	14	1.89
3965--4358	98	4.0	98	80	7	345	40	20	24	14	1.90
4119--4357	98	2.5	97	86	4	347	39	20	25	15	1.91
4791--4894	17	6.1	17	81	8	113	42	0	3	52	1.26
4808--4882	6	12.8	6	75	10	75	42	1	2	53	1.23
4808--4894	35	2.5	35	81	3	104	42	1	3	52	1.25
4816--4881	24	2.8	25	86	9	93	42	1	3	53	1.25
5542--5646	12	8.5	12	72	14	63	53	5	1	39	1.36
8144--8186	18	2.3	18	80	4	50	55	2	37	4	1.33
10665--10829	30	5.6	28	76	10	118	32	19	3	44	1.68
10651--10913	29	9.0	29	76	12	182	31	21	3	43	1.68
10842--11011	31	5.6	30	68	9	87	32	28	2	36	1.72
10643--11064	59	7.1	59	79	7	317	31	24	3	40	1.73
10643--11064	29	14.2	28	72	15	181	31	24	3	40	1.73
10842--11092	60	4.2	59	81	6	188	31	27	4	36	1.77
11299--11482	97	1.9	97	81	6	221	32	15	13	38	1.86
12294--12327	17	2.0	17	100	0	68	29	5	29	35	1.81
17397--17452	18	3.0	18	79	10	51	44	0	1	53	1.11
32877--32909	14	2.3	15	89	5	50	21	0	3	75	0.93
38173--38227	27	2.0	28	89	3	85	36	5	20	38	1.75
39196--39232	8	4.9	8	87	12	51	43	0	0	56	0.99
46450--46487	6	6.2	6	96	3	67	15	18	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48286--48315	16	1.9	16	93	6	53	70	0	0	30	0.88
55168--55250	43	1.9	43	85	0	112	40	9	3	45	1.54
59535--60099	283	2.0	282	98	0	1085	30	16	12	39	1.86
64712--64761	25	2.0	25	84	7	66	72	2	2	24	1.06
66010--66060	20	2.5	21	81	9	52	62	3	5	27	1.36
68019--68399	191	2.0	191	94	0	663	33	21	12	33	1.91
74427--74488	25	2.5	25	94	0	106	37	6	3	53	1.43
75133--75190	30	1.9	31	85	3	82	37	6	5	50	1.52
79476--79504	10	3.0	10	95	5	51	89	0	10	0	0.48
95001--95042	20	2.0	20	86	9	57	57	4	4	33	1.41
106948--107050	52	2.0	52	96	0	188	27	17	22	33	1.96
109259--109292	14	2.4	14	100	0	68	41	0	58	0	0.98
115971--116007	19	1.9	19	88	0	56	48	0	8	43	1.32
118007--118038	15	2.1	15	94	0	55	25	3	3	68	1.18
118031--118087	25	2.3	25	84	0	69	31	3	3	61	1.30

Tables:   1

The End!