Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007482.1 Kokia drynarioides strain JFW-HI SEQ_122106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 843

Length: 1406
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.30

Warning! 54 characters in sequence are not A, C, G, or T


Found at i:369 original size:3 final size:3

Alignment explanation


    Indices: 363--413  Score: 84
    Period size: 3  Copynumber: 16.7  Consensus size: 3

        353 CATAGCATTA

                                  *                                     
        363 AAT AAT AAT AAT AAAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

                  
        409 AAT AA
          1 AAT AA

        414 AAGAAAGTGA


Statistics
Matches: 45,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
   3   42  0.93
   4    3  0.07

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.