Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007488.1 Kokia drynarioides strain JFW-HI SEQ_122112, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3023
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38


Found at i:1780 original size:17 final size:17

Alignment explanation


    Indices: 1737--1773  Score: 58
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       1727 CCACGTATAC

                             
       1737 TTTAT-ATTTTTTTAAT
          1 TTTATAATTTTTTTAAT

                           * 
       1753 TTTATAATTTTTTTATT
          1 TTTATAATTTTTTTAAT

                
       1770 TTTA
          1 TTTA

       1774 AAGTTTTCAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  16    5  0.26
  17   14  0.74

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (17 bp):   
TTTATAATTTTTTTAAT
Done.