Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000749.1 Kokia drynarioides strain JFW-HI SEQ_111789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6109
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29


Found at i:460 original size:16 final size:16

Alignment explanation


    Indices: 436--469  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        426 AAACATTAAA

                     *      
        436 CCGTAACCCGAGATAT
          1 CCGTAACCCAAGATAT

                *           
        452 CCGTGACCCAAGATAT
          1 CCGTAACCCAAGATAT

              
        468 CC
          1 CC

        470 CCCAGCCGGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18


Consensus pattern (16 bp):   
CCGTAACCCAAGATAT

Found at i:3950 original size:29 final size:29

Alignment explanation


    Indices: 3917--3975  Score: 109
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3907 CATATGCAGC

                       *                 
       3917 AGAAAACCAATGACAAAGCAATAATTATA
          1 AGAAAACCAATAACAAAGCAATAATTATA

                                         
       3946 AGAAAACCAATAACAAAGCAATAATTATA
          1 AGAAAACCAATAACAAAGCAATAATTATA

             
       3975 A
          1 A

       3976 ACTAACTAGT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.61, C:0.14, G:0.08, T:0.17


Consensus pattern (29 bp):   
AGAAAACCAATAACAAAGCAATAATTATA
Done.