Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007493.1 Kokia drynarioides strain JFW-HI SEQ_122117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11024
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:5988 original size:21 final size:20

Alignment explanation


    Indices: 5947--5992  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       5937 GGAGTTTTTA

                                 
       5947 GTATCGGTAAAAGTAAGACTT
          1 GTATCGGTAAAAG-AAGACTT

                                  
       5968 GTATCGGTAAAA-AAGTCACTT
          1 GTATCGGTAAAAGAAG--ACTT

                
       5989 GTAT
          1 GTAT

       5993 AGATAGAACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  19    3  0.13
  21   20  0.87

ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30


Consensus pattern (20 bp):   
GTATCGGTAAAAGAAGACTT

Found at i:9098 original size:26 final size:26

Alignment explanation


    Indices: 9069--9121  Score: 70
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       9059 AGTGATTTTT

                     *    *       *   
       9069 TTTTATATTCTAATTTTAATTTCTTA
          1 TTTTATATTATAATGTTAATTTATTA

                       *              
       9095 TTTTATATTATGATGTTAATTTATTA
          1 TTTTATATTATAATGTTAATTTATTA

             
       9121 T
          1 T

       9122 GTCTCATGTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   23  1.00

ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64


Consensus pattern (26 bp):   
TTTTATATTATAATGTTAATTTATTA
Done.