Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007500.1 Kokia drynarioides strain JFW-HI SEQ_122124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11295
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:5033 original size:6 final size:6

Alignment explanation


    Indices: 5022--5047  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       5012 TAAAAAAAAA

                                          
       5022 TTCATT TTCATT TTCATT TTCATT TT
          1 TTCATT TTCATT TTCATT TTCATT TT

       5048 TCGGATAAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69


Consensus pattern (6 bp):   
TTCATT

Found at i:5376 original size:26 final size:24

Alignment explanation


    Indices: 5335--5382  Score: 60
    Period size: 26  Copynumber: 1.9  Consensus size: 24

       5325 TCTTAAACTC

                       *     *      
       5335 TTTTTAAAAAATAAAATCTGAATT
          1 TTTTTAAAAAACAAAATATGAATT

                                    
       5359 TTTTTAAGGAAAACAAAATATGAA
          1 TTTTTAA--AAAACAAAATATGAA

       5383 AATTAAACTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24    7  0.35
  26   13  0.65

ACGTcount: A:0.52, C:0.04, G:0.08, T:0.35


Consensus pattern (24 bp):   
TTTTTAAAAAACAAAATATGAATT

Found at i:8331 original size:2 final size:2

Alignment explanation


    Indices: 8324--8365  Score: 66
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       8314 TGCTAAGCAA

                                                 *           *            
       8324 AG AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AC AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       8366 TAGGTTGTAA


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.05, G:0.45, T:0.00


Consensus pattern (2 bp):   
AG

Done.