Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007507.1 Kokia drynarioides strain JFW-HI SEQ_122131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5519
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33


Found at i:1807 original size:3 final size:3

Alignment explanation


    Indices: 1799--1823  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1789 TTGTTATGAC

                                             
       1799 AGA AGA AGA AGA AGA AGA AGA AGA A
          1 AGA AGA AGA AGA AGA AGA AGA AGA A

       1824 ATTCTAGATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AGA

Done.