Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007508.1 Kokia drynarioides strain JFW-HI SEQ_122132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9925
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:6583 original size:28 final size:28

Alignment explanation


    Indices: 6548--6615  Score: 109
    Period size: 28  Copynumber: 2.4  Consensus size: 28

       6538 CCCAAGAGCA

                            *           
       6548 TCGCGACCAAGAGAAATTGAAGGGCATG
          1 TCGCGACCAAGAGAAACTGAAGGGCATG

                                     *  
       6576 TCGCGACCAAGAGAAACTGAAGGGCGTG
          1 TCGCGACCAAGAGAAACTGAAGGGCATG

                   *    
       6604 TCGCGACAAAGA
          1 TCGCGACCAAGA

       6616 CTCCTTATGT


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  28   37  1.00

ACGTcount: A:0.35, C:0.21, G:0.32, T:0.12


Consensus pattern (28 bp):   
TCGCGACCAAGAGAAACTGAAGGGCATG
Done.