Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007510.1 Kokia drynarioides strain JFW-HI SEQ_122134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7804
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36


Found at i:1867 original size:25 final size:26

Alignment explanation


    Indices: 1839--1887  Score: 64
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1829 ATATATAGGA

                              *       
       1839 ATAATAATA-AGTATTTATTTTTTGT
          1 ATAATAATATAGTATTTAATTTTTGT

                  *   *             
       1864 ATAATATTATCGTATTTAATTTTT
          1 ATAATAATATAGTATTTAATTTTT

       1888 ATTAAACACA


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  25    8  0.40
  26   12  0.60

ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57


Consensus pattern (26 bp):   
ATAATAATATAGTATTTAATTTTTGT

Found at i:3910 original size:49 final size:49

Alignment explanation


    Indices: 3838--3933  Score: 192
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       3828 ATTTATATGG

                                                             
       3838 TGAAGGTGGTAGACAATATCCATTTATATTTAGTAATATTGGATTTCGA
          1 TGAAGGTGGTAGACAATATCCATTTATATTTAGTAATATTGGATTTCGA

                                                           
       3887 TGAAGGTGGTAGACAATATCCATTTATATTTAGTAATATTGGATTTC
          1 TGAAGGTGGTAGACAATATCCATTTATATTTAGTAATATTGGATTTC

       3934 CTTCTTTATA


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   47  1.00

ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40


Consensus pattern (49 bp):   
TGAAGGTGGTAGACAATATCCATTTATATTTAGTAATATTGGATTTCGA
Done.