Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007514.1 Kokia drynarioides strain JFW-HI SEQ_122138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7435
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35


Found at i:3791 original size:4 final size:4

Alignment explanation


    Indices: 3759--3819  Score: 77
    Period size: 4  Copynumber: 15.2  Consensus size: 4

       3749 GATATGTGTG

                      *    *    *    *    *                            
       3759 TATA TATA CATA CATA CATA CATA CATA TATA TATA TATA TATA TATA
          1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA

                            
       3807 TATA TATA TATA T
          1 TATA TATA TATA T

       3820 GTATGTATGT


Statistics
Matches: 55,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   4   55  1.00

ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43


Consensus pattern (4 bp):   
TATA

Found at i:4181 original size:58 final size:58

Alignment explanation


    Indices: 4107--4275  Score: 180
    Period size: 60  Copynumber: 2.9  Consensus size: 58

       4097 TTAATATAAT

                       *                *       *              *       
       4107 ATTTGGTACCTAAACTTGACACTTTTTCTTAATTTGATACTTAAACTTTTTTGACCCA-
          1 ATTTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTTGGA-CCAG

                      *      *    *                                      
       4165 ATTTGGTACCCGAACTTAACACATTTTCCTAATTTGGTA-TCTAAACTTTATCTGGACCAG
          1 ATTTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACT-TAAACTTT-T-TGGACCAG

                 *   *           *                  *   *      
       4225 ATTTGATACTTGAACTTGACATTTTTTCCTAATTTGGTACCTAAGCTTTTT
          1 ATTTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTT

       4276 CTAAATTTAA


Statistics
Matches: 91,  Mismatches: 15, Indels: 10
        0.78            0.13        0.09

Matches are distributed among these distances:
  57    1  0.01
  58   42  0.46
  59    5  0.05
  60   43  0.47

ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43


Consensus pattern (58 bp):   
ATTTGGTACCTGAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTTGGACCAG

Done.