Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007520.1 Kokia drynarioides strain JFW-HI SEQ_122144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2176
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:1301 original size:29 final size:29

Alignment explanation


    Indices: 1269--1325  Score: 78
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1259 TTGTTTCGGA

                          * *            
       1269 TTATATTCTAATTATTTATGTTTGAAATT
          1 TTATATTCTAATTACTCATGTTTGAAATT

                   *     *              
       1298 TTATATTTTAATTGCTCATGTTTGAAAT
          1 TTATATTCTAATTACTCATGTTTGAAAT

       1326 CTGCAGTGTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   24  1.00

ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56


Consensus pattern (29 bp):   
TTATATTCTAATTACTCATGTTTGAAATT
Done.