Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007522.1 Kokia drynarioides strain JFW-HI SEQ_122147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 65584
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:9124 original size:15 final size:15

Alignment explanation


    Indices: 9099--9137  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       9089 ATGATCATGA

                *        * 
       9099 CATCATCATCATCGT
          1 CATCTTCATCATCAT

             *             
       9114 CTTCTTCATCATCAT
          1 CATCTTCATCATCAT

                     
       9129 CATCTTCAT
          1 CATCTTCAT

       9138 ACTGGGTTTC


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.23, C:0.33, G:0.03, T:0.41


Consensus pattern (15 bp):   
CATCTTCATCATCAT

Found at i:9124 original size:18 final size:18

Alignment explanation


    Indices: 9101--9135  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       9091 GATCATGACA

                       *      
       9101 TCATCATCATCGTCTTCT
          1 TCATCATCATCATCTTCT

                             
       9119 TCATCATCATCATCTTC
          1 TCATCATCATCATCTTC

       9136 ATACTGGGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.20, C:0.34, G:0.03, T:0.43


Consensus pattern (18 bp):   
TCATCATCATCATCTTCT

Found at i:40599 original size:33 final size:33

Alignment explanation


    Indices: 40557--40620  Score: 128
    Period size: 33  Copynumber: 1.9  Consensus size: 33

      40547 CTTTTACGTG

                                             
      40557 AAGATTAAAGTGGTAGTTTTTGAATCATTATAA
          1 AAGATTAAAGTGGTAGTTTTTGAATCATTATAA

                                           
      40590 AAGATTAAAGTGGTAGTTTTTGAATCATTAT
          1 AAGATTAAAGTGGTAGTTTTTGAATCATTAT

      40621 GTCCTCAGAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.38, C:0.03, G:0.19, T:0.41


Consensus pattern (33 bp):   
AAGATTAAAGTGGTAGTTTTTGAATCATTATAA
Done.