genome.fa.s7526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007526.1 Kokia drynarioides strain JFW-HI SEQ_122151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74447

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2085--2276	82	2.3	82	86	1	258	21	32	18	27	1.97
2082--2279	41	4.8	41	83	1	234	22	31	18	26	1.97
2086--2312	123	1.8	123	80	2	267	21	29	17	31	1.96
2252--2363	40	2.8	40	90	1	170	18	22	15	43	1.87
3348--3389	18	2.3	18	100	0	84	40	16	21	21	1.91
5338--5472	68	2.0	68	82	5	166	40	2	4	52	1.37
9913--9956	19	2.3	19	100	0	88	56	4	34	4	1.40
11485--11553	33	2.1	33	100	0	138	40	5	30	23	1.78
14154--14225	24	3.0	24	87	0	108	22	19	18	40	1.92
16018--16066	25	2.0	24	92	4	80	28	12	18	40	1.86
17438--17540	39	2.7	38	76	13	111	25	16	26	32	1.96
17489--17598	58	1.9	58	88	3	168	23	15	23	37	1.93
17577--17947	39	9.3	39	76	9	313	26	16	22	33	1.96
17612--17947	80	4.2	80	92	0	537	26	16	24	33	1.96
18002--18192	50	3.8	50	84	2	222	23	22	17	36	1.95
18002--18190	100	1.9	100	83	2	245	23	22	17	35	1.95
19054--19144	20	4.9	20	78	15	74	0	21	1	76	0.84
19054--19143	8	11.0	8	78	13	76	0	22	1	76	0.85
24150--24297	66	2.2	67	85	4	192	56	2	0	39	1.18
24150--24290	62	2.2	67	85	10	186	56	2	0	40	1.19
24263--24304	18	2.3	18	80	8	50	76	0	2	21	0.90
24577--24647	28	2.5	28	90	4	117	33	29	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26923--27040	62	1.9	63	82	5	150	28	20	24	26	1.99
29249--29323	27	2.8	26	86	8	71	33	1	16	49	1.54
38354--38408	20	2.9	20	86	10	80	36	3	1	58	1.26
40289--40480	29	6.5	29	76	12	160	34	26	2	36	1.70
40289--40480	59	3.3	57	78	11	192	34	26	2	36	1.70
52029--52058	14	2.2	14	94	5	53	30	23	10	36	1.87
52278--52400	36	3.4	36	87	4	176	35	23	11	29	1.90
52481--52582	23	4.4	23	87	0	141	44	16	6	32	1.74
61333--61375	21	1.9	24	86	13	65	55	0	0	44	0.99
67932--68003	23	3.0	24	80	17	78	29	0	9	61	1.28
67963--68017	26	2.1	26	83	6	67	32	0	5	61	1.19
70335--70361	6	4.5	6	100	0	54	14	51	0	33	1.43

Tables:   1

The End!