Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007536.1 Kokia drynarioides strain JFW-HI SEQ_122161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5864
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30


Found at i:1898 original size:23 final size:23

Alignment explanation


    Indices: 1848--1898  Score: 66
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       1838 GTTACGTGTC

                               *   
       1848 AGTATAAAGACATGTCAGATATG
          1 AGTATAAAGACATGTCAGAAATG

            *        *      *      
       1871 GGTATAAAGGCATGTCTGAAATG
          1 AGTATAAAGACATGTCAGAAATG

                 
       1894 AGTAT
          1 AGTAT

       1899 GTTCAATTTT


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27


Consensus pattern (23 bp):   
AGTATAAAGACATGTCAGAAATG

Found at i:4704 original size:20 final size:20

Alignment explanation


    Indices: 4661--4704  Score: 63
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       4651 TAAATTATTT

                             *  
       4661 AAAATTTATAAAATATTCAA
          1 AAAATTTATAAAATATTAAA

                                 
       4681 AAAATTTATAGAAAT-TTAAA
          1 AAAATTTATA-AAATATTAAA

                
       4701 AAAA
          1 AAAA

       4705 AAGTATGAAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20   18  0.82
  21    4  0.18

ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32


Consensus pattern (20 bp):   
AAAATTTATAAAATATTAAA
Done.