Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007543.1 Kokia drynarioides strain JFW-HI SEQ_122171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3336
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37


Found at i:3128 original size:23 final size:25

Alignment explanation


    Indices: 3102--3147  Score: 69
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       3092 CCAATTAGGG

                                     
       3102 AATTAT-TGTTTAG-ATTTAATTCT
          1 AATTATCTGTTTAGAATTTAATTCT

                    *              
       3125 AATTATCTTTTTAGAATTTAATT
          1 AATTATCTGTTTAGAATTTAATT

       3148 TGGATCCAAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    6  0.30
  25    8  0.40

ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57


Consensus pattern (25 bp):   
AATTATCTGTTTAGAATTTAATTCT

Done.