Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007545.1 Kokia drynarioides strain JFW-HI SEQ_122173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9969
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:4376 original size:29 final size:31

Alignment explanation


    Indices: 4342--4414  Score: 89
    Period size: 29  Copynumber: 2.5  Consensus size: 31

       4332 ATGGGGACTA

                                *          
       4342 GATCAAATTAGTCCCTC-TATTATT-AAAAG
          1 GATCAAATTAGTCCCTCATAATATTAAAAAG

                  *                        
       4371 GATCAATTTAGT-CCTCATAATATTAAAAAG
          1 GATCAAATTAGTCCCTCATAATATTAAAAAG

            *       *     
       4401 AATCAAATAAGTCC
          1 GATCAAATTAGTCC

       4415 AAATTGTAAC


Statistics
Matches: 36,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  28    4  0.11
  29   17  0.47
  30   14  0.39
  31    1  0.03

ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32


Consensus pattern (31 bp):   
GATCAAATTAGTCCCTCATAATATTAAAAAG

Done.