Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007547.1 Kokia drynarioides strain JFW-HI SEQ_122175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2551
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33


Found at i:1456 original size:27 final size:27

Alignment explanation


    Indices: 1425--1488  Score: 76
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       1415 GGGGAATGTG

                    *     *            
       1425 TAAAAAAACATAAATAT-AAATAAACA
          1 TAAAAAAAAATAAAGATGAAATAAACA

             *    *                    
       1451 TGAAAACAAATAAAGATGAAATAAACA
          1 TAAAAAAAAATAAAGATGAAATAAACA

                *      
       1478 TAAATAAAAAT
          1 TAAAAAAAAAT

       1489 TATATAAGTG


Statistics
Matches: 30,  Mismatches: 7, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  26   13  0.43
  27   17  0.57

ACGTcount: A:0.70, C:0.06, G:0.05, T:0.19


Consensus pattern (27 bp):   
TAAAAAAAAATAAAGATGAAATAAACA

Found at i:1488 original size:16 final size:17

Alignment explanation


    Indices: 1426--1481  Score: 55
    Period size: 16  Copynumber: 3.5  Consensus size: 17

       1416 GGGAATGTGT

                             
       1426 AAAA-AAACAT-AAATA
          1 AAAATAAACATGAAATA

            *                
       1441 TAAATAAACATGAAA-A
          1 AAAATAAACATGAAATA

            *       *        
       1457 CAAATAAAGATGAAATA
          1 AAAATAAACATGAAATA

              *     
       1474 AACATAAA
          1 AAAATAAA

       1482 TAAAAATTAT


Statistics
Matches: 33,  Mismatches: 5, Indels: 4
        0.79            0.12        0.10

Matches are distributed among these distances:
  15    3  0.09
  16   20  0.61
  17   10  0.30

ACGTcount: A:0.71, C:0.07, G:0.05, T:0.16


Consensus pattern (17 bp):   
AAAATAAACATGAAATA
Done.