Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007553.1 Kokia drynarioides strain JFW-HI SEQ_122181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2466
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:443 original size:18 final size:18

Alignment explanation


    Indices: 420--456  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        410 CCATTAAAGA

                              
        420 AACTTGAAGAGAAACACT
          1 AACTTGAAGAGAAACACT

                              
        438 AACTTGAAGAGAAACACT
          1 AACTTGAAGAGAAACACT

             
        456 A
          1 A

        457 GTTTAACTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16


Consensus pattern (18 bp):   
AACTTGAAGAGAAACACT

Found at i:1094 original size:15 final size:15

Alignment explanation


    Indices: 1059--1108  Score: 55
    Period size: 15  Copynumber: 3.2  Consensus size: 15

       1049 TTCACCTTAA

                       *    
       1059 TTTTTTATATTCAGTT
          1 TTTTTTAT-TTTAGTT

                        *   
       1075 CTTTTTTATTTTGGTT
          1 -TTTTTTATTTTAGTT

                  *        
       1091 TTTTTTTTTTTAGTT
          1 TTTTTTATTTTAGTT

               
       1106 TTT
          1 TTT

       1109 ATCTGCCTTT


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  15   16  0.55
  16    5  0.17
  17    8  0.28

ACGTcount: A:0.10, C:0.04, G:0.08, T:0.78


Consensus pattern (15 bp):   
TTTTTTATTTTAGTT
Done.