Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007556.1 Kokia drynarioides strain JFW-HI SEQ_122184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10852
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:6783 original size:31 final size:31

Alignment explanation


    Indices: 6744--6813  Score: 104
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       6734 TATTTTTTGG

                                           
       6744 ATGACCAAAATGAAAGTAACCTAAAAATTGA
          1 ATGACCAAAATGAAAGTAACCTAAAAATTGA

            *                **       *    
       6775 GTGACCAAAATGAAAGTGCCCTAAAATTTGA
          1 ATGACCAAAATGAAAGTAACCTAAAAATTGA

                    
       6806 ATGACCAA
          1 ATGACCAA

       6814 CTAAGTAGTT


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.49, C:0.16, G:0.16, T:0.20


Consensus pattern (31 bp):   
ATGACCAAAATGAAAGTAACCTAAAAATTGA
Done.