Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000756.1 Kokia drynarioides strain JFW-HI SEQ_111802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6741
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:1814 original size:20 final size:20

Alignment explanation


    Indices: 1778--1815  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1768 AGACTAATAG

                        *       
       1778 AAATAACTGAAATATAAAAA
          1 AAATAACTGAAAAATAAAAA

                               
       1798 AAATAAACT-AAAAATAAA
          1 AAAT-AACTGAAAAATAAA

       1816 TGATAAAAAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   12  0.75
  21    4  0.25

ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18


Consensus pattern (20 bp):   
AAATAACTGAAAAATAAAAA
Done.