Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007576.1 Kokia drynarioides strain JFW-HI SEQ_122206, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5299
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34


Found at i:4716 original size:48 final size:49

Alignment explanation


    Indices: 4653--4763  Score: 145
    Period size: 48  Copynumber: 2.3  Consensus size: 49

       4643 AATTTAATAG

                      *                                 *     
       4653 ATTTAATATTTAATTTAAT-TCAATACTTATCTTAAT-AGCATTTTATTA
          1 ATTTAATATTAAATTTAATCT-AATACTTATCTTAATAAGCATTATATTA

                                  *  *       *     *         
       4701 ATTTAATATTAAATTTAATCTATTATTTATCTTGATAAGTATTATATTA
          1 ATTTAATATTAAATTTAATCTAATACTTATCTTAATAAGCATTATATTA

                          
       4750 ATTTAATATTAAAT
          1 ATTTAATATTAAAT

       4764 GATTAAGTTT


Statistics
Matches: 55,  Mismatches: 6, Indels: 3
        0.86            0.09        0.05

Matches are distributed among these distances:
  48   30  0.55
  49   25  0.45

ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52


Consensus pattern (49 bp):   
ATTTAATATTAAATTTAATCTAATACTTATCTTAATAAGCATTATATTA

Done.