Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007578.1 Kokia drynarioides strain JFW-HI SEQ_122208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1752
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40


Found at i:390 original size:25 final size:26

Alignment explanation


    Indices: 362--421  Score: 70
    Period size: 25  Copynumber: 2.4  Consensus size: 26

        352 TCATTTTATG

                              *      *
        362 TTTATATATTCC-ATACATAAATAAT
          1 TTTATATATTCCAATACAAAAATAAA

                 *                    
        387 TTTATTTA-TCCAATACAAAAATAAA
          1 TTTATATATTCCAATACAAAAATAAA

              *       
        412 TTGATATATT
          1 TTTATATATT

        422 TATTTCTTTA


Statistics
Matches: 28,  Mismatches: 5, Indels: 3
        0.78            0.14        0.08

Matches are distributed among these distances:
  24    3  0.11
  25   24  0.86
  26    1  0.04

ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43


Consensus pattern (26 bp):   
TTTATATATTCCAATACAAAAATAAA

Found at i:1604 original size:18 final size:18

Alignment explanation


    Indices: 1581--1615  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1571 AGATAATAAT

                   *   *      
       1581 TTAGATCTATATGAAATA
          1 TTAGATCGATACGAAATA

                             
       1599 TTAGATCGATACGAAAT
          1 TTAGATCGATACGAAAT

       1616 TTTCTATGCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34


Consensus pattern (18 bp):   
TTAGATCGATACGAAATA
Done.