Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000758.1 Kokia drynarioides strain JFW-HI SEQ_111805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877
Length: 1463
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Found at i:383 original size:216 final size:213
Alignment explanation
Indices: 1--1463 Score: 962
Period size: 216 Copynumber: 6.8 Consensus size: 213
* * * * * *
1 AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCCTGGTTCTTGGACGAAC-TTCTGAACGTG
1 AATT-AAAACTTTTTTACGTGAGAATTGTTTCACT-CTTGTTCTTGGACGAACATAC-AAAC-TG
* * * * * * * * * *
65 CT-AAACATTAACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCTATTC-TT
62 GTCAAACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCATTCATT
* * ** * * * * *
128 TCAACCAATTTTTCGATCATTCCATGATCGGGAAATCGCATTATTTGGTCTAAATAGCTTGTCAA
127 T-GACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
193 TTTGTAATCAACTTTT-GTGCTTTG
191 TTTGTAAT-AACTTTTGGT-CTTTG
* * *
217 AACTAAATACTTTTTTATGTGAGAATTGTTTCCCTCTTGCTTCTTGGACGAACATACAAACTGGT
1 AATTAAA-ACTTTTTTACGTGAGAATTGTTTCACTCTTG-TTCTTGGACGAACATACAAACTGGT
* *
282 CAAA-ATTTTAC-AAGTTCATTTATAAC-TCTGGTTCCTTAA-AGTATTCAAGACGTTCCATTGA
64 CAAACA-TTTACGAA-TTCATTTATAACATC-GGTTCC-TAAGAGTATTCAAGACGATCCATTCA
* ** * *
343 TTTGAGCAATTTTTTTGAATCTTCCATG-CTGAGAAATCGCATCATTTGGTCTAAATGGTTTGTC
125 TTTGACCAA-TTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
407 ATTTTGTAAAAAACTTTTGGTCTTTG
189 ATTTTGT-AATAACTTTTGGTCTTTG
* * * * * * * * *
433 AATTAAAAACTTTTTAACGTGATAAATGTTTCTCTATTAGTTCTTGGACGAACGTCCGAACTTGT
1 AATT-AAAACTTTTTTACGTGAGAATTGTTTCACTCTT-GTTCTTGGACGAACATACAAACTGGT
* * * *
498 TAAACATTTACGAATTCTTTTATAACATCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTTG
64 CAAACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCATTCATTTG
* * *
563 ACCAATTTTTTGAAGATTCCATGACCGGGAAACCGCATCATTTCGT-TAAAATAGTTTGTCATTT
129 ACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTT
627 TGTAAATAACTTTTGGTCTTTG
193 TGT-AATAACTTTTGGTCTTTG
* * * * * * *
649 CATTAAAAGCTTTTTTACGTTAGAATTCTTTCACTCTTGGTTCTTGGACGAA-TTTCTGAACTTG
1 AATTAAAA-CTTTTTTACGTGAGAATTGTTTCACTCTT-GTTCTTGGACGAACATAC-AAACTGG
* * * * * * * * *
713 T----CA---ACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTC
63 TCAAACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCATTCATTT
** ** * * * * * * * *
771 GACTTATTTTCCGAACATTTCAT-TCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATG
128 GACCAATTTTTTGAAGATTCCATGAC-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* **
835 TTGTAAAAAACAATTGGTCTTTG
192 TTGT-AATAACTTTTGGTCTTTG
* * * * * * * *
858 ATTTAAAAACTTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTG
1 AATT-AAAAC-TTTTTTACGTGAGAATTGTTTCACTCTT-GTTCTTGGACGAACATACAAACTGG
* * * * * * * * * * *
923 TCAAACATTTATGAGTTCTTTTATAACTTTGCTTTCTGAGAGTATTCAATACGATCCATTCCTTC
63 TCAAACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCATTCATTT
* * * * * *
988 GACCAATTTCTTGAACATTCCATG-CTTGGGCAATCGCATCATTTGGTCTAAAAAGTTTGTCATT
128 GACCAATTTTTTGAAGATTCCATGAC-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * *
1052 TTATAAACAACATTTAGTCTTTG
192 TTGT-AATAACTTTTGGTCTTTG
* * * * * * * * *
1075 AATTAAAAACTTTATTATGTGAGAATTGTTTCTCTCTCGGTTCTTGG-TGAA-GTGCCGAACTTG
1 AATT-AAAACTTTTTTACGTGAGAATTGTTTCACTCT-TGTTCTTGGACGAACAT-ACAAACTGG
* * * * * * * * *
1138 TCAAACATTTCCTAGTTCTTTTATAACTTCGGTTCC-AGATAGTAGTCAAGATGATCCATTCCTT
63 TCAAACATTTACGAATTCATTTATAACATCGGTTCCTA-AGAGTATTCAAGACGATCCATTCATT
* * * *
1202 TGACCAATTTTTTGAACATTCCATG-CTCGGGAAATCGCATCATTCGGTGTAAA-ACGTTTGTCA
127 TGACCAATTTTTTGAAGATTCCATGAC-CGAGAAATCGCATCATTTGGTCTAAATA-GTTTGTCA
* * *
1265 TTTTGTAAAAAGCTATTGGTCATTG
190 TTTTGTAATAA-CTTTTGGTCTTTG
* ** ** * * *
1290 AATTAAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAAGTTCCGAACTTG
1 AATT--AAAACTTTTTTACGTGAGAATTGTTTCACTCTT-GTTCTTGGACGAACATACAAACTGG
* * * * * * *
1355 CCAAACATTTACTAAATCCTTTATAACTTCGGTTCCTAATAGTAGTCAAGACGATCCACTTC-TT
63 TCAAACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCA-TTCATT
* * * * * *
1419 CGACCAATTTTTCGAACATTCCATGATCGGGATATCGCATCATTT
127 TGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTT
Statistics
Matches: 1032, Mismatches: 168, Indels: 93
0.80 0.13 0.07
Matches are distributed among these distances:
208 1 0.00
209 117 0.11
210 50 0.05
211 4 0.00
212 2 0.00
214 8 0.01
215 174 0.17
216 405 0.39
217 266 0.26
218 5 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (213 bp):
AATTAAAACTTTTTTACGTGAGAATTGTTTCACTCTTGTTCTTGGACGAACATACAAACTGGTCA
AACATTTACGAATTCATTTATAACATCGGTTCCTAAGAGTATTCAAGACGATCCATTCATTTGAC
CAATTTTTTGAAGATTCCATGACCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
AATAACTTTTGGTCTTTG
Found at i:1235 original size:641 final size:644
Alignment explanation
Indices: 1--1460 Score: 1658
Period size: 641 Copynumber: 2.3 Consensus size: 644
*
1 AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCCTGGTTCTTGGACGAACTTCTGAACGTGC
1 AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGC
* * * * *
66 TAAACATTAACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCTATTCTTTCA
66 T--AC--TAACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTCA
* * * * * *
131 ACCAATTTTTCGATCATTCCATGATCGGGAAATCGCATTATTTGGTCTAAATAGCTTGTCAATTT
127 ACCAATTTTCCGAACATTCCATGATCGGGAAATCGCATCACTTGGTCTAAAAAGCTTGGCAATTT
** * * * * *
196 GTAATCAACTTTTGTGCTTTGAACTAAATACTTTTTTATGTGAGAATTGTTTCCCTCTTGCTTCT
192 GTAAAAAACATTGGTGCTTTGAACTAAAAACTTTTTTACGTGAGAATTGGTTCCCTCTTGCTTCT
* * *
261 TGGACGAACATACAAACTGGTCAAAATTTTACAAGTTCATTTATAACTCTGGTTCCTTAAAGTAT
257 TGGACAAACATACAAACTGGTCAAAATTTTACAAGTTCATTTATAACTCTGCTTCCTGAAAGTAT
* * * * *
326 TCAAGACGTTCCATTGATTTGAGCAATTTTTTTGAATCTTCCATGCTGAGAAATCGCATCATTTG
322 TCAAGACGATCCATTCATTCGACCAATTTTCTTGAATCTTCCATGCTGAGAAATCGCATCATTTG
** * * * *
391 GTCTAAATGGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTAACGTGAT
387 GTCTAAAAAGTTTGTCATTTTATAAAAAACATTTAGTCTTTGAATTAAAAACTTTTTAACGTGAG
* *
456 AAATGTTTCTCTATTAGTTCTTGGACGAACGTCCGAACTTGTTAAACATTTACGAATTCTTTTAT
452 AAATGTTTCTCTATCAGTTCTTGGACGAACGTCCGAACTTGTCAAACATTTACGAATTCTTTTAT
* *
521 AACATCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTTGACCAATTTTTTGAAGATTCCATG
517 AACATCGGTTCCTAAGAGTAGTCAAGATGATCCATTCCTTTGACCAATTTTTTGAACATTCCATG
* *
586 ACCGGGAAACCGCATCATTTC-GT-TAAAATAGTTTGTCATTTTGTAAATAA-CTTTTGGTCTTT
582 ACCGGGAAACCGCATCA-TTCGGTGTAAAA-AGTTTGTCATTTTGTAAA-AAGCTATTGGTCATT
648 G
644 G
* * * * *
649 CATTAAAAGCTTTTTTACGTTAGAATTCTTTCACTCTTGGTTCTTGGACGAATTTCTGAACTTG-
1 AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGC
* * * * **
713 T-C-AACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTT
66 TACTAACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTCAACCA
* ** *
776 ATTTTCCGAACATTTCATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGC-ATGTTGTA
131 ATTTTCCGAACATTCCATGATCGGGAAATCGCATCACTTGGTCTAAAAAGCTTGGCAAT-TTGTA
** * *
840 AAAAACAATTGGT-CTTTGATTTAAAAACTTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
195 AAAAAC-ATTGGTGCTTTGAACTAAAAAC-TTTTTTACGTGAGAATTGGTTCCCTCTTGCTTCTT
* * * * ** * * * *
904 GGACAAACTTTCGAACTTGTCAAACA-TTTATGAGTTCTTTTATAACTTTGCTTTCTGAGAGTAT
258 GGACAAACATACAAACTGGTCAAA-ATTTTACAAGTTCATTTATAACTCTGCTTCCTGAAAGTAT
* * * *
968 TCAATACGATCCATTCCTTCGACCAA-TTTCTTGAA-CATTCCATGCTTGGGCAATCGCATCATT
322 TCAAGACGATCCATTCATTCGACCAATTTTCTTGAATC-TTCCATGC-TGAGAAATCGCATCATT
* *
1031 TGGTCTAAAAAGTTTGTCATTTTATAAACAACATTTAGTCTTTGAATTAAAAACTTTATT-ATGT
385 TGGTCTAAAAAGTTTGTCATTTTATAAAAAACATTTAGTCTTTGAATTAAAAACTTT-TTAACGT
* * * * * * *
1095 GAGAATTGTTTCTCTCTCGGTTCTTGG-TGAA-GTGCCGAACTTGTCAAACATTTCCTAGTTCTT
449 GAGAAATGTTTCTCTATCAGTTCTTGGACGAACGT-CCGAACTTGTCAAACATTTACGAATTCTT
* *
1158 TTATAACTTCGGTTCC-AGATAGTAGTCAAGATGATCCATTCCTTTGACCAATTTTTTGAACATT
513 TTATAACATCGGTTCCTA-AGAGTAGTCAAGATGATCCATTCCTTTGACCAATTTTTTGAACATT
* *
1222 CCATG-CTCGGGAAATCGCATCATTCGGTGTAAAACGTTTGTCATTTTGTAAAAAGCTATTGGTC
577 CCATGAC-CGGGAAACCGCATCATTCGGTGTAAAAAGTTTGTCATTTTGTAAAAAGCTATTGGTC
1286 ATTG
641 ATTG
* * ** * * *
1290 AATTAAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAAGTTCCGAACTTG
1 AATT-AAAAACTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTG
* * * ** * * * *
1355 CCAAACATTTACTAAATCCTTTATAACTTCGGTTCCTAATAGTAGTCAAGACGATCCACTT-CTT
65 -C-TAC--TAACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTAGTCAAGACGATCCA-TTCCTT
* * *
1419 CGACCAATTTTTCGAACATTCCATGATCGGGATATCGCATCA
125 CAACCAATTTTCCGAACATTCCATGATCGGGAAATCGCATCA
1461 TTT
Statistics
Matches: 677, Mismatches: 113, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
640 12 0.02
641 271 0.40
642 252 0.37
643 3 0.00
644 1 0.00
646 1 0.00
647 1 0.00
648 58 0.09
649 76 0.11
650 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (644 bp):
AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGC
TACTAACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTAGTCAAGACGATCCATTCCTTCAACCA
ATTTTCCGAACATTCCATGATCGGGAAATCGCATCACTTGGTCTAAAAAGCTTGGCAATTTGTAA
AAAACATTGGTGCTTTGAACTAAAAACTTTTTTACGTGAGAATTGGTTCCCTCTTGCTTCTTGGA
CAAACATACAAACTGGTCAAAATTTTACAAGTTCATTTATAACTCTGCTTCCTGAAAGTATTCAA
GACGATCCATTCATTCGACCAATTTTCTTGAATCTTCCATGCTGAGAAATCGCATCATTTGGTCT
AAAAAGTTTGTCATTTTATAAAAAACATTTAGTCTTTGAATTAAAAACTTTTTAACGTGAGAAAT
GTTTCTCTATCAGTTCTTGGACGAACGTCCGAACTTGTCAAACATTTACGAATTCTTTTATAACA
TCGGTTCCTAAGAGTAGTCAAGATGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGACCG
GGAAACCGCATCATTCGGTGTAAAAAGTTTGTCATTTTGTAAAAAGCTATTGGTCATTG
Found at i:1353 original size:432 final size:427
Alignment explanation
Indices: 1--1463 Score: 1595
Period size: 432 Copynumber: 3.4 Consensus size: 427
* * * * * *
1 AATTAAAAACTTTTTTACGTTAGAATTCTTTCTCTCCTGGTTCTTGGACGAACTTCTGAACGTG-
1 AATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGT
* * * * * *
65 CTAAACATTAACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCTATTCTTTC
66 C-AAACATTTACTAATTCTTTTATAACTTCGGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTC
* * * * * *
130 AACCAATTTTTCGATCATTCCATGATCGGGAAATCGCATTATTTGGTCTAAATAGCTTGTCAATT
130 GACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
* * * * * *
195 TGTAATCAACTTTTGTGCTTTGAACTAAATACTTTTTTATGTGAGAATTGTTTCCCTCTTGCTTC
195 TGTAAACAACTTTAGT-CTTTGAATTAAAAACTTTTTTATGTGAGAATTGTTTCACTCTTGGTTC
* * * * *
260 TTGGACGAACATACAAACTGGTCAAAATTTTACAAGTTCATTTATAAC-TCTGGTTCCTTAAAGT
259 TTGGACGAA-ATCCGAACTTGTCAAAA-TTT-CAAGTTCTTTTATAACTTC-GGTTCCTGAAAGT
* ** * *
324 ATTCAAGACGTTCCATTGATTTGAGCAATTTTTTTGAATC-TTCCATGCT-GAGAAATCGCATCA
320 ATTCAAGACGATCCATTCCTTTGACCAA-TTTTTTGAA-CATTCCATGCTCGGGAAATCGCATCA
** *
387 TTTGGTCTAAATGGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTG
383 -TTGGTCTAAAAAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTG
* * * * * * *
433 AATTAAAAACTTTTTAACGTGATAAATGTTTCTCTATTAGTTCTTGGACGAACGTCCGAACTTGT
1 AATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGT
* * * * * *
498 TAAACATTTACGAATTCTTTTATAACATCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTTG
66 CAAACATTTACTAATTCTTTTATAACTTCGGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTCG
* * * * *
563 ACCAATTTTTTGAAGATTCCATGACCGGGAAACCGCATCATTTCGT-TAAAATAGTTTGTCATTT
131 ACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTT
* * * * * * *
627 TGTAAATAACTTTTGGTCTTTGCATTAAAAGCTTTTTTACGTTAGAATTCTTTCACTCTTGGTTC
195 TGTAAACAAC-TTTAGTCTTTGAATTAAAAACTTTTTTATGTGAGAATTGTTTCACTCTTGGTTC
* * * * *
692 TTGGACGAATTTCTGAACTTGTC--AA---CGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATT
259 TTGGACGAA-ATCCGAACTTGTCAAAATTTCAAGTTCTTTTATAACTTCGGTTCCTGAAAGTATT
* * * ** ** * *
752 TAATACGATCCATTCCTTCGACTTATTTTCCGAACATTTCATTCTCGGGAAATCGCATCACTTGG
323 CAAGACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCA-TTGG
* * *
817 TCTAAAAAGTTTGGCATGTTGTAAAAAACAATTGGTCTTTG
387 TCTAAAAAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTG
* * *
858 ATTTAAAAACTTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTG
1 AATTAAAAAC-TTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * * * *
923 TCAAACATTTA-TGAGTTCTTTTATAACTTTGCTTTCTGAGAGTATTCAATACGATCCATTCCTT
65 TCAAACATTTACT-AATTCTTTTATAACTTCGGTTCCTAAGAGTAGTCAAGACGATCCATTCCTT
* * *
987 CGACCAATTTCTT-GAACATTCCATGCTTGGGCAATCGCATCATTTGGTCTAAAAAGTTTGTCAT
129 CGACCAATTT-TTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCAT
* * * *
1051 TTTATAAACAACATTTAGTCTTTGAATTAAAAACTTTATTATGTGAGAATTGTTTCTCTCTCGGT
193 TTTGTAAACAAC-TTTAGTCTTTGAATTAAAAACTTTTTTATGTGAGAATTGTTTCACTCTTGGT
* * * * *
1116 TCTTGG-TGAAGTGCCGAACTTGTCAAACATTTCCTAGTTCTTTTATAACTTCGGTTCCAGATAG
257 TCTTGGACGAAAT-CCGAACTTGTCAAA-ATTT-CAAGTTCTTTTATAACTTCGGTTCCTGAAAG
* *
1180 TAGTCAAGATGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCAT
319 TATTCAAGACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCAT
* * * *
1245 TCGGTGTAAAACGTTTGTCATTTTGTAAAAAGCTATTGGTCATTG
384 T-GGTCTAAAAAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTG
* *
1290 AATTAAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAAGTTCCGAACTTG
1 AATT-AAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * *
1355 CCAAACATTTACTAAATCCTTTATAACTTCGGTTCCTAATAGTAGTCAAGACGATCCACTT-CTT
65 TCAAACATTTACTAATTCTTTTATAACTTCGGTTCCTAAGAGTAGTCAAGACGATCCA-TTCCTT
*
1419 CGACCAATTTTTCGAACATTCCATGATCGGGATATCGCATCATTT
129 CGACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTT
Statistics
Matches: 845, Mismatches: 163, Indels: 46
0.80 0.15 0.04
Matches are distributed among these distances:
423 1 0.00
424 15 0.02
425 117 0.14
426 206 0.24
427 8 0.01
428 1 0.00
430 2 0.00
431 8 0.01
432 473 0.56
433 14 0.02
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (427 bp):
AATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGT
CAAACATTTACTAATTCTTTTATAACTTCGGTTCCTAAGAGTAGTCAAGACGATCCATTCCTTCG
ACCAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTT
GTAAACAACTTTAGTCTTTGAATTAAAAACTTTTTTATGTGAGAATTGTTTCACTCTTGGTTCTT
GGACGAAATCCGAACTTGTCAAAATTTCAAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAA
GACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTGGTCTA
AAAAGTTTGTCATTTTGTAAAAAACTATTGGTCTTTG
Done.