genome.fa.s7589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007589.1 Kokia drynarioides strain JFW-HI SEQ_122219, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40248

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3958--4047	35	2.6	35	92	1	146	21	24	15	38	1.92
5089--5132	8	5.2	8	81	10	52	50	2	2	45	1.27
5092--5132	9	4.8	9	76	11	50	53	2	2	41	1.27
5087--5128	17	2.6	16	82	14	50	54	2	2	40	1.26
10677--10845	57	2.9	57	78	3	194	47	11	15	24	1.78
10775--10832	26	2.3	26	79	8	66	48	10	13	27	1.75
10756--10845	31	3.1	31	68	21	84	46	11	16	25	1.80
12469--12500	3	10.7	3	93	0	55	65	0	3	31	1.08
15793--15839	24	1.9	25	82	4	60	27	4	4	63	1.31
16892--16988	31	3.2	31	76	13	87	29	4	5	60	1.37
19864--19894	16	1.9	16	93	0	53	29	35	0	35	1.58
19983--20012	5	5.8	5	96	4	51	76	0	0	23	0.78
22947--23061	30	3.9	30	76	7	112	34	2	25	37	1.70
23030--23093	28	2.3	29	76	15	73	31	4	26	37	1.77
23122--23266	30	4.9	30	81	6	161	42	0	21	35	1.58
23082--23266	59	3.1	58	77	8	185	40	1	23	35	1.62
23443--23628	59	3.1	59	79	4	205	39	1	24	33	1.65
23483--23628	30	4.9	30	79	5	152	41	1	22	34	1.63
23490--23628	29	4.7	29	78	7	127	41	0	23	34	1.59
23461--23627	60	2.8	59	77	11	171	41	1	24	32	1.66
25792--26591	39	20.5	39	70	12	340	25	18	30	25	1.98
25885--26277	155	2.5	156	84	0	475	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25907--26435	117	4.5	115	75	8	433	25	18	31	24	1.97
25944--26511	117	4.9	116	72	9	375	25	19	31	23	1.98
26617--26701	39	2.2	39	73	0	62	23	15	35	25	1.94
25823--26705	78	11.3	78	76	8	481	25	18	31	25	1.98
26707--27817	39	28.6	39	67	10	353	25	17	30	25	1.97
27009--27815	78	10.4	78	75	4	461	25	17	31	26	1.97
27805--27901	41	2.4	41	85	0	131	35	13	18	32	1.90
28259--28739	50	9.7	50	73	2	270	20	27	15	36	1.93
28259--28678	198	2.1	197	81	4	497	20	27	15	36	1.93
35415--35482	29	2.3	29	82	7	75	38	2	19	39	1.67
35464--35535	29	2.5	28	84	6	83	31	1	26	40	1.65
35483--35562	29	2.8	29	83	9	94	28	3	27	40	1.74
35589--35656	30	2.3	29	82	9	84	47	5	16	30	1.70
35602--35701	30	3.3	29	83	6	119	48	2	18	32	1.59
35602--35748	60	2.5	59	81	8	156	47	2	17	32	1.59
36674--36703	13	2.3	13	94	0	51	30	13	46	10	1.75
37388--37417	5	6.0	5	92	0	51	20	0	3	76	0.92

Tables:   1

The End!