Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007592.1 Kokia drynarioides strain JFW-HI SEQ_122223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4865
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:1748 original size:22 final size:21

Alignment explanation


    Indices: 1701--1748  Score: 60
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       1691 GACTTCCATA

                              *  
       1701 ATTAACTTAATTAATCATCTT
          1 ATTAACTTAATTAATCATATT

            *                *    
       1722 TTTAACCTTAATTAATCCTATT
          1 ATTAA-CTTAATTAATCATATT

                 
       1744 ATTAA
          1 ATTAA

       1749 TAAATATTTG


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48


Consensus pattern (21 bp):   
ATTAACTTAATTAATCATATT
Done.