Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007593.1 Kokia drynarioides strain JFW-HI SEQ_122224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5886
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:986 original size:23 final size:25

Alignment explanation


    Indices: 960--1011  Score: 72
    Period size: 25  Copynumber: 2.2  Consensus size: 25

        950 GCTTGTGTCT

                                     
        960 TTTATAAAAAT-T-ATTAATATTTA
          1 TTTATAAAAATATCATTAATATTTA

                              * *    
        983 TTTATAAAAATATCATTATTTTTTA
          1 TTTATAAAAATATCATTAATATTTA

                
       1008 TTTA
          1 TTTA

       1012 ATAGTGAGAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  23   11  0.44
  24    1  0.04
  25   13  0.52

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (25 bp):   
TTTATAAAAATATCATTAATATTTA

Found at i:1002 original size:22 final size:22

Alignment explanation


    Indices: 959--1008  Score: 66
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        949 AGCTTGTGTC

                           *      
        959 TTTTATAAAAATTATTAATATT
          1 TTTTATAAAAATTATCAATATT

                              *    
        981 TATTTATAAAAA-TATCATTATT
          1 T-TTTATAAAAATTATCAATATT

                  
       1003 TTTTAT
          1 TTTTAT

       1009 TTAATAGTGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  21    5  0.20
  22   10  0.40
  23   10  0.40

ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56


Consensus pattern (22 bp):   
TTTTATAAAAATTATCAATATT

Done.